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Evolutionary and Swarm Intelligence methods for Systems Biology


Marco S Nobile

In many fields of life sciences, mathematical modeling and computational analysis are more and more exploited as complementary tools to experimental laboratory methods [Kitano 2002] . Thanks to this synergy, researchers can nowadays achieve a faster and in-depth understanding of biological systems. However, dynamic mathematical models require a proper parameterization (e.g., the kinetic parameters of reactions) to perform faithful simulations and lead to a better understanding of such systems. Kinetic parameters are often difficult, or even impossible, to measure by means of experimental methodologies. This leads to the problem of Parameter Estimation (PE) [Chou 2009] , that is, the inference of parameters according to some indirect measurement (e.g., experimental time-series of chemical species concentrations).

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